Annotation Sets

The GENCODE annotation sets may be downloaded here.

1000 Genomes Pilot Project: Low coverage samples

Source pilot_data, release: 2010_07, FT
Indels CEU.low_coverage.2010_07.indel.genotypes.vcf.gz
JPTCHB.low_coverage.2010_07.indel.genotypes.vcf.gz
YRI.low_coverage.2010_07.indel.genotypes.vcf.gz
SNPs CEU.low_coverage.2010_07.genotypes.vcf.gz
CHBJPT.low_coverage.2010_07.genotypes.vcf.gz
YRI.low_coverage.2010_07.genotypes.vcf.gz
Annotation Set GENCODE (version 3b, hg18), using CDS elements where gene_type = protein_coding and transcript_type = protein_coding

1000 Genomes Project, Phase I, chr22, SNP calls

Source release: 20100804, FTP
SNPs ALL.2of4intersection.20100804.genotypes.vcf.gz
Annotation Set GENCODE (version 3c, hg19), using CDS elements where gene_type = protein_coding and transcript_type = protein_coding